Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	247281	247467	187	43 [0]	[0] 4	phoR	sensory histidine kinase in two‑component regulatory system with PhoB

GAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGG  >  minE/247219‑247280                                                              | gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:3576490/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:2717826/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:2895637/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:3008204/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:3038383/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:3083243/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:3105189/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:3211285/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:3287594/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:340116/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:3410920/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:2689164/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:3614196/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:451820/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:636536/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:639188/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:644893/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:730495/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:826463/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:927511/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:961313/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:98308/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:2137645/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:1228740/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:1259550/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:1294819/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:1315149/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:1319903/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:1632713/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:1680532/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:1699510/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:1699674/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:2075500/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:1119945/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:216335/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:2390066/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:2392081/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:2441665/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:2459112/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:2551765/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:258186/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:2608397/1‑62 (MQ=255) gAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACgg  >  1:261926/1‑62 (MQ=255)                                                              | GAGCGCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGG  >  minE/247219‑247280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑