Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	247963	247965	3	46 [0]	[0] 41	phoR/brnQ	sensory histidine kinase in two‑component regulatory system with PhoB/predicted branched chain amino acid transporter

TACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAT  >  minE/247901‑247962                                                              | tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:3452861/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:2602964/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:271932/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:2742915/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:2870993/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:2880857/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:290505/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:3212022/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:3280990/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:3297289/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:3311258/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:342421/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:2559115/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:3535150/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:3614275/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:519726/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:563930/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:592391/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:622796/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:753316/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:82665/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:903519/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:914019/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:193636/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:109522/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:1151471/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:1331077/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:1401899/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:1414026/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:1627928/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:1648347/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:1661088/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:1673042/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:1756050/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:1023716/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:1965297/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:1979409/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:2170839/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:2182499/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:222252/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:2232166/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:2335879/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:2504448/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:2505795/1‑62 (MQ=255) tACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:2547039/1‑62 (MQ=255) tACGGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAt  >  1:1488354/1‑62 (MQ=255)                                                              | TACTGACTGCATTAACGCGGTAAATCGAAAAACTATTCTTCGCCGCGCCTGGTTGGGAGTAT  >  minE/247901‑247962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑