Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2954175	2954235	61	45 [0]	[0] 70	holD	DNA polymerase III, psi subunit

AGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAGGGGG  >  minE/2954115‑2954174                                                            | aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:443035/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:2871273/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:2925442/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:2986512/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:3463835/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:352758/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:3531713/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:3576717/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:3605509/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:3642221/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:3648554/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:2757993/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:447898/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:473773/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:489428/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:516965/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:574627/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:786437/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:829826/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:854199/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:876064/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:979874/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:275309/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:123423/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:1236919/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:1274692/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:1364140/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:1391300/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:1497693/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:1783226/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:1831937/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:1862548/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:2043706/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:22003/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:2219463/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:2227097/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:2229924/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:2242138/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:2500047/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:2682906/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:2693616/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGAAggggg  <  1:2219039/60‑1 (MQ=255) aGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGGCGCCCTGGCGCGTTGCAggggg  <  1:1050055/60‑1 (MQ=255)  gTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:2380780/59‑1 (MQ=255)                  aTTACCCTGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAggggg  <  1:356155/43‑1 (MQ=255)                                                            | AGTTACAGCAACTGGGCATTACCCAGTGGTCGCTGCGTCGCCCTGGCGCGTTGCAGGGGG  >  minE/2954115‑2954174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑