Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	445364	445480	117	42 [0]	[0] 13	kdpD	fused sensory histidine kinase in two‑component regulatory system with KdpE

CGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCCAGCAG  >  minE/445303‑445363                                                             | cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCTCGTTCTCcagcag  <  1:2914604/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:338580/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1087252/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:2730621/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:2844202/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:2867846/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:2900646/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:3040241/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:3059559/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:3138201/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:3192422/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:2710251/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:3392511/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:3538508/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:356594/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:694804/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:736044/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:779071/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:827165/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:88539/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:964016/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1722058/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1157182/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:116193/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1179677/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1209203/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1237829/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:126929/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1324508/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1381894/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1546369/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:2461779/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1724619/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1773962/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1834096/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1884953/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1910666/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:2086905/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:220285/61‑1 (MQ=255) cGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:2309761/61‑1 (MQ=255) cGTGGGCATCGATACCAATTCCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:1592094/61‑1 (MQ=255) cGTGGGCATCGATACCAAATTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCcagcag  <  1:288404/61‑1 (MQ=255)                                                             | CGTGGGCATCGATACCAATTTCGGCCTGCGCACCCGCATATTTCACCGCGTTCTCCAGCAG  >  minE/445303‑445363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑