Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	543901	543918	18	78 [0]	[0] 6	yliL/mntR	hypothetical protein/transcriptional regulator of mntH

ACATAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACCTC  >  minE/543839‑543900                                                              | tcaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2351642/2‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2937627/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:3373933/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:3329073/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:324856/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:3199148/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:3166873/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:315005/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:3087644/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:3063828/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:3005273/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:3383263/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:292157/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2897707/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2795509/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2739508/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2711286/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2636491/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:263299/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2591567/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:577959/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:972111/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:963433/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:888405/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:811200/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:783688/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:753411/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:728125/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:627333/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:587738/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2535914/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:548779/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:51712/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:510004/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:504579/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:3590086/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:3573645/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:3428935/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:3412080/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:134815/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1011002/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1703930/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1659348/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1533254/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1445627/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:144382/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1439168/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1395500/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1729262/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1314195/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1241345/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1224920/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1214120/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1175297/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1137645/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1091733/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1085824/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1780715/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2531344/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2491880/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2477314/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2453672/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2426526/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2361723/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2245266/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2187921/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2182278/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2177323/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2134805/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2110303/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2074450/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2010005/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1998030/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:1732245/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGAGCATACACctc  >  1:1534809/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGAATAAACACGCGCATACACctc  >  1:1349680/1‑62 (MQ=255) acaTAGAGAGCAGCATTAACAGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:2392087/1‑62 (MQ=255) acaTAGACAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACctc  >  1:65947/1‑62 (MQ=255)                                                              | ACATAGAGAGCAGCATTAACCGTACTTTAAAGGGAGAATGACTAAACACGCGCATACACCTC  >  minE/543839‑543900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑