Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	620712	620750	39	59 [0]	[0] 13	ihfB	integration host factor (IHF), DNA‑binding protein, beta subunit

CGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACG  >  minE/620650‑620711                                                              | cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCTGACg  <  1:3440809/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:3418428/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:26681/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:2704415/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:2708459/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:2724441/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:2745907/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:3000065/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:3027393/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:3041089/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:3134507/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:3164846/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:3228752/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:3307421/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:3376463/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:3387995/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:2651788/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:3494720/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:40256/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:40421/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:430880/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:445022/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:449887/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:477466/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:539031/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:548902/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:642172/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:738294/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:9803/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1749511/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1066679/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:107076/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1202519/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1236350/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1282116/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1306354/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1415697/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1507360/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1638349/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1664080/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1703346/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1710438/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1727305/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1000896/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:175473/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1771421/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1880053/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1914663/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:1982106/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:199048/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:2070557/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:2222808/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:2253656/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:2323060/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:2475939/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:2482463/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:2589173/62‑1 (MQ=255) cGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:2649477/62‑1 (MQ=255)                        cAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACg  <  1:79367/39‑1 (MQ=255)                                                              | CGTATTGAAATCCGCGGTTTCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACG  >  minE/620650‑620711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑