Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ minE 750968 751065 98 73 [0] [0] 3 mfd transcription‑repair coupling factor

CACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGA  >  minE/750906‑750967
                                                             |
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGTATCGGCGTTGCAGTAAGCGTCAGa  <  1:1406787/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:311639/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3149455/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3090016/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3083691/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3055560/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3046680/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3013875/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2987738/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2981178/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2938748/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2904807/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2868265/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:283021/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2799821/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2761066/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:27149/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2708013/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2626166/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3532545/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:784715/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:76705/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:725077/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:676278/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:551804/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:460997/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:430064/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:39631/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3126882/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3510331/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3411019/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3357330/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3255175/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3243951/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3224578/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3222421/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2547875/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1486601/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1924471/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1003862/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1832728/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1820031/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1782458/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1774149/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1628/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1507501/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1854453/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1464643/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1389636/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1366880/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1340830/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1296745/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1210239/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1009723/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2332044/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2529587/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2499254/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2421413/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:239599/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2370816/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2361772/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2296325/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2282755/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2192395/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2140104/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2130033/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2099863/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2014023/62‑1 (MQ=255)
cACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGCCGTTGCAGTAAGCGTCAGa  <  1:1103306/62‑1 (MQ=255)
cACGCATTCCGCTAATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1945837/62‑1 (MQ=255)
 aCGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:3626734/61‑1 (MQ=255)
     aTTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:2038958/57‑1 (MQ=255)
           cTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGa  <  1:1133351/51‑1 (MQ=255)
                                                             |
CACGCATTCCGCTCATTGCCATATTCAGCGTACGTGGGATCGGCGTTGCAGTAAGCGTCAGA  >  minE/750906‑750967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: