Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1046532	1046562	31	40 [0]	[0] 11	ydhH	conserved hypothetical protein

GCGGTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAAAATGGCGCAA  >  minE/1046470‑1046531                                                              | gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:3472198/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:103186/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:2489784/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:2763679/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:2798334/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:2884123/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:309880/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:3128640/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:315978/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:3314605/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:2399359/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:3518235/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:410426/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:461889/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:501/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:543824/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:672416/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:981647/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:993649/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:1879643/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:1106648/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:1210214/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:1246101/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:1319286/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:1324965/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:1624138/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:1671930/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:1759149/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:1975797/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:2001462/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:205265/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:2087303/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:2286333/62‑1 (MQ=255) gcggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcccaa  <  1:2813884/62‑1 (MQ=255)  cggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:232263/61‑1 (MQ=255)  cggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:1656136/61‑1 (MQ=255)  cggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:2876899/61‑1 (MQ=255)  cggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:1366540/61‑1 (MQ=255)  cggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:2193866/61‑1 (MQ=255)  cggTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAaaatggcgcaa  <  1:2286514/61‑1 (MQ=255)                                                              | GCGGTGAGTTCTGCCAGTGTCGCCTGCACATCTCGGGGATCAACACCCGGAAAATGGCGCAA  >  minE/1046470‑1046531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑