Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1229069	1229122	54	23 [0]	[0] 32	holE	DNA polymerase III, theta subunit

TGATGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAA  >  minE/1229007‑1229068                                                              | tgatgaGGAGATTAAGAATGCTGAAGATTCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:1453273/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:1918494/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:697156/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:42680/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:3467385/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:2930909/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:2903513/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:2312830/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:2237972/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:2141306/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:1937455/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:1122018/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:1732381/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:1692960/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:1687009/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:1539253/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:1222169/62‑1 (MQ=255) tgatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATAAAACAGAAATGGATaaa  <  1:1756184/62‑1 (MQ=255)  gatgatGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:147286/61‑1 (MQ=255)  gatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:2393042/61‑1 (MQ=255)  gatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:2489284/61‑1 (MQ=255)  gatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:1426270/61‑1 (MQ=255)  gatgaGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATaaa  <  1:1397731/61‑1 (MQ=255)                                                              | TGATGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAA  >  minE/1229007‑1229068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑