Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1411791	1411792	2	86 [0]	[0] 26	rsuA	16S rRNA pseudouridylate 516 synthase

TAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGA  >  minE/1411731‑1411790                                                            | tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCTTAAGCGACATCATGTTAAGGa  >  1:609010/1‑60 (MQ=39) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2981556/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3217998/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:317646/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3174616/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3167414/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3152272/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3147492/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3130358/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3060373/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2995968/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2995303/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3239957/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2938348/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2918300/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2756806/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2609213/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2551233/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2526812/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2511999/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2491741/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:10531/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:481497/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:968870/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:944983/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:924862/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:635392/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:630936/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:58650/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:580087/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:511018/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:505131/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2467398/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:461695/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3648734/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3578238/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3507489/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:343186/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3391165/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3300739/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:326588/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:3244210/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1347268/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1672974/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1647304/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1644113/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1625684/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1622432/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1603671/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1537496/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1515677/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1503860/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1451237/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1679374/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1220825/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1219315/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1214272/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1205998/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1192371/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1190821/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1174402/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1117696/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1105590/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1073583/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2166109/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2380533/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2354503/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2336536/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2305703/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2277314/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2273368/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2226918/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2166664/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2389628/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2147186/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2031289/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2005656/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1943145/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1922746/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1890291/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1852206/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1832419/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1804642/1‑60 (MQ=255) tAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:1728465/1‑60 (MQ=255) tAACGTGGACCGTGCTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2589511/1‑60 (MQ=255) tAACCTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGa  >  1:2550698/1‑60 (MQ=255)                                                            | TAACGTGGACCGTGTTGCTGCGCCAGCGGGTTGCCATCGTAAGCGACATCATGTTCAGGA  >  minE/1411731‑1411790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑