Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1447198	1447204	7	47 [0]	[0] 15	rcsC	hybrid sensory kinase in two‑component regulatory system with RcsB and YojN

TCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTC  >  minE/1447136‑1447197                                                              | tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:437122/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:1142239/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:3405549/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:3407282/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:3439219/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:3463805/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:348994/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:3501374/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:351188/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:3609752/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:377136/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:422383/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:3136222/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:488433/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:54503/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:556391/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:656337/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:675959/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:696738/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:706751/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:739398/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:837494/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:972528/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:219440/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:1416896/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:1452332/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:1483195/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:1617027/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:1758804/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:1861367/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:2053332/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:2151304/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:2156613/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:3118644/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:2326062/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:2326064/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:2425287/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:246262/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:2678687/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:2783919/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:29332/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:3006539/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:3037913/62‑1 (MQ=255) tCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:3082278/62‑1 (MQ=255)  ccGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:537398/61‑1 (MQ=255)              ctcGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:739332/49‑1 (MQ=255)                      cgcgGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTc  <  1:2284281/41‑1 (MQ=255)                                                              | TCCGCCTGCGTTTCTCGTCCACGCGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTC  >  minE/1447136‑1447197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑