Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1520304	1520307	4	27 [0]	[0] 89	truA	pseudouridylate synthase I

CACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGC  >  minE/1520243‑1520303                                                             | cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:2267317/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:686513/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:356527/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:3565005/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:334747/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:2823350/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:2743156/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:2735743/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:2699593/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:2551489/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:2381376/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:2368622/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:1102035/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:2251224/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:2185981/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:1975157/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:1902624/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:1819883/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:1721402/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:1691488/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:1661173/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:1546853/61‑1 (MQ=255) cACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCAATCGc  <  1:1158404/61‑1 (MQ=255)  aCCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:2252465/60‑1 (MQ=255)        ttCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:152805/54‑1 (MQ=255)                    gCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:237081/42‑1 (MQ=255)                      cGACAATATTCCTGACCATATGATGTACAAAAGCATTCGc  <  1:3283795/40‑1 (MQ=255)                                                             | CACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGC  >  minE/1520243‑1520303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑