Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1523529	1523574	46	67 [0]	[1] 36	flk	predicted flagella assembly protein

CGCGCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTG  >  minE/1523468‑1523528                                                             | cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCTATTAGGGGAGTATTCACGTCTg  <  1:3304651/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGTGAGTATTTACGTCTg  <  1:812690/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:417206/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:547067/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:3294471/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:3251921/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:3245206/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:3240085/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:323959/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:3181070/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:3074224/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:3026881/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2889404/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2881067/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2868216/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2816468/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:1033393/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2815251/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:593967/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:60298/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:62451/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:645227/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:696139/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:768883/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:811165/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:823082/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:882173/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:884616/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:886329/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:912956/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:91439/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:996348/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2002436/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:1224632/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:1245565/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:1352156/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:1356407/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:1359924/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:1374342/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:1473634/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:148987/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:1515484/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:1763072/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:183987/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:1868697/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:188397/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:1996117/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2803157/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2208063/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2740254/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2721887/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2676925/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2534078/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2420868/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2294422/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2257743/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2216303/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2214202/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2208527/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2156873/61‑1 (MQ=255) cgcgCAAAAAAGCCATTCTGCCCGCCAGC‑TTTATCGCAATTAGGGGAGTATTTACGTCTg  <  1:955191/60‑1 (MQ=39) cgcgCAAAAAAGCCATTCTGCACGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2756900/61‑1 (MQ=255)  gcgcAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:1783556/60‑1 (MQ=255)  gcgcAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:3261531/60‑1 (MQ=255)  gcgcAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:580558/60‑1 (MQ=255)                  cTGCCCGCCAGCTTTTAGCGCAATTAGTGGAGTATTTACGTCTg  <  1:2550944/44‑1 (MQ=255)                          cAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTg  <  1:2463877/36‑1 (MQ=255)                                                             | CGCGCAAAAAAGCCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTG  >  minE/1523468‑1523528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑