Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1826946	1826961	16	45 [0]	[0] 68	mutS	methyl‑directed mismatch repair protein

GCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTG  >  minE/1826962‑1827006 |                                             gCGGGGATTCCCTACCTTGCGGTGGAAACCTATCTCg          >  1:3627387/1‑37 (MQ=37) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCg          >  1:760347/1‑37 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAAc    >  1:88278/1‑43 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAAc    >  1:3321331/1‑43 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:2840692/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:3399367/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:3381297/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:3336718/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:3254712/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:3108944/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:3065920/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:3054732/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:3532188/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:2838021/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:2835134/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:281847/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:2808942/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:267879/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1003965/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:3421982/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:2618672/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:3580686/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:3581211/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:388553/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:485346/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:503178/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:505193/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:687291/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:764517/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:778989/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:803754/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:831193/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:869777/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:885288/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1181311/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:2553540/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:136093/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1349966/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1323503/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1272418/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1269485/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:122285/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:12049/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1468943/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1132861/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1103235/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1082139/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:103700/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1034144/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1015694/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1015010/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1827438/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:2523626/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:242587/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:2313260/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:2235663/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:2169939/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:2110917/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1918058/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1488644/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1816718/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1777645/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1732100/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1644452/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1631456/1‑45 (MQ=255) gCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:1609976/1‑45 (MQ=255) gCGGGGATTCACTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:455396/1‑45 (MQ=255) gCGGGGATACCCTACCATGCGGTGGAAAACTATCTCGCCAAACTg  >  1:2214655/1‑45 (MQ=255) |                                             GCGGGGATTCCCTACCATGCGGTGGAAAACTATCTCGCCAAACTG  >  minE/1826962‑1827006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑