Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2390442	2390453	12	2 [0]	[0] 31	rhtC	threonine efflux system

CCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGAAA  >  minE/2390454‑2390515 |                                                              ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:2791544/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:919092/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:88708/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:818130/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:769566/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:722706/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:645185/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:550819/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:425615/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:395367/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:3640531/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:3542733/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:3451501/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:3075057/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:2996774/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:2991890/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:1038529/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:2646721/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:2629823/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:247029/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:2152794/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:1859512/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:1755645/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:1578237/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:1544211/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:1497542/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:1491099/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:1431089/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:1205953/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:1190137/62‑1 (MQ=255) ccGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGaaa  <  1:1150105/62‑1 (MQ=255) |                                                              CCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGAAA  >  minE/2390454‑2390515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑