Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2401692	2401772	81	27 [0]	[0] 78	xerC	site‑specific tyrosine recombinase

GCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTCAC  >  minE/2401773‑2401833 |                                                             gCGTTGCGCCCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:45023/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCt                        >  1:3231378/1‑39 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTccc                   >  1:907247/1‑44 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTccc                   >  1:1809680/1‑44 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCAt                >  1:3630250/1‑47 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCca          >  1:2760136/1‑53 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCacac       >  1:3436735/1‑56 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACtt     >  1:186223/1‑58 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACtt     >  1:3290214/1‑58 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACtt     >  1:168952/1‑58 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:3367249/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:344301/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:336617/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:3333596/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:3277351/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:3270899/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:3255464/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:3235516/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:3176503/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:3169214/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:3066114/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:3054679/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:305167/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2975845/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:465839/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:997196/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:889121/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:874267/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:809141/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:726311/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:614767/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:602559/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:518960/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:34036/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:401388/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:369983/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:36337/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:3570598/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:3479871/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2938725/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:3433682/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:152009/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1817384/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:18160/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1779643/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1759481/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1714745/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1712154/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1635127/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1577612/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:184420/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:146267/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1382673/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1238425/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:122798/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1123238/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1102614/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1078340/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1026694/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2461828/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1006735/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2871600/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2844781/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2789861/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2711822/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2706958/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2611256/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2521512/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2941806/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2438659/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:217989/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2145089/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:205445/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:2009210/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1946746/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTc    >  1:1856087/1‑59 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTCAc  >  1:3610911/1‑61 (MQ=255) gCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACCTc    >  1:2734001/1‑59 (MQ=255) |                                                             GCGTTGCGACCAATCGGCAGGCGGCGCTCTTTGCTGCCTTTCCCCATAACCCACACTTCAC  >  minE/2401773‑2401833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑