Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	538053	538095	43	3 [0]	[0] 74	rhlE	RNA helicase

GCGCTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGC  >  minE/538096‑538157 |                                                              gcgcTAATCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1800550/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:3476061/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:42586/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:389728/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:36338/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:3606034/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:3600128/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:3569546/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:3524880/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:3506176/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:431281/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:3351788/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:3261410/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:3244665/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:3201634/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:319007/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:3184415/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:314311/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:313473/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:3123822/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:789305/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:935901/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:920476/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:903886/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:903009/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:889839/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:86012/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:813255/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:803506/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:3109277/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:748819/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:708662/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:668803/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:633251/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:61665/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:540998/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:446485/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:432838/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1544550/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2031945/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1924070/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:190501/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1848825/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1828426/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1809820/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1668413/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1544961/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2135481/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:150993/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1457959/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1370947/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1302195/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1265125/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1192044/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1160412/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1082989/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2600613/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:292459/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2855671/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:284858/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2823026/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2804820/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2719853/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2680967/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2631995/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:1074310/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2593933/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2537324/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2535145/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2526448/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2409454/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2401691/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2287747/62‑1 (MQ=255) gcgcTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGc  <  1:2191955/62‑1 (MQ=255) |                                                              GCGCTAACCATCTGGCTGAACAGCTCAATAAAGATGGCATCCGTAGTGCGGCGATCCACGGC  >  minE/538096‑538157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑