Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	540924	540986	63	49 [0]	[0] 63	rhtA	threonine and homoserine efflux system

CCGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAG  >  minE/540987‑541048 |                                                              ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:3473088/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2371797/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2452428/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:247779/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2534725/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2694063/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2839323/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2882232/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:307903/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:3112536/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:3120888/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:3298347/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:3329303/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:3345361/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:337444/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:3417848/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2364969/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:3482120/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:354921/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:3574127/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:3638676/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:397283/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:401573/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:420114/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:434681/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:448889/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:48958/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:516114/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:642179/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:660847/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:71570/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:973501/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1623898/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1090588/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1111954/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1177439/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1217510/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1218485/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1238555/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1251115/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:127276/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1325392/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1356994/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:136365/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1470122/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1480213/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1522209/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1570955/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1062442/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1675018/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1742593/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1860099/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:1867642/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2021893/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2039194/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2046982/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2110555/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:211703/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:212229/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:212232/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2182927/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2186094/62‑1 (MQ=255) ccGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAg  <  1:2206820/62‑1 (MQ=255) |                                                              CCGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAG  >  minE/540987‑541048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑