Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	768370	768370	1	24 [0]	[0] 54	phoQ	sensory histidine kinase in two‑compoent regulatory system with PhoP

TGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCT  >  minE/768371‑768432 |                                                              tGGGGCGTAATCTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:684081/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCTGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:1355883/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCAcagc                             >  1:1698786/1‑35 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAAcag            >  1:2620289/1‑52 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:333592/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:1067967/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:2732341/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:2760199/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:2803510/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:2808887/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:2820044/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:3023898/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:3058761/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:3061035/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:3150180/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:3232871/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:2721991/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:3370644/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:3377950/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:588486/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:649869/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:694241/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:750133/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:799153/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:898710/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:908953/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:249602/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:1129552/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:127735/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:1463490/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:1768917/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:1838674/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:1908173/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:1946225/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:1980129/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:2541547/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:2065726/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:2117441/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:2303883/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:2479356/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:2053269/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg    >  1:2370545/1‑60 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCt  <  1:3558657/62‑1 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCt  <  1:1078623/62‑1 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCt  <  1:1121244/62‑1 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCt  <  1:1237564/62‑1 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCt  <  1:1472960/62‑1 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCt  <  1:1497087/62‑1 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCt  <  1:396484/62‑1 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCt  <  1:2777079/62‑1 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCt  <  1:3375610/62‑1 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCt  <  1:3006672/62‑1 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCt  <  1:2035811/62‑1 (MQ=255) tGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCt  <  1:2036263/62‑1 (MQ=255) |                                                              TGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCT  >  minE/768371‑768432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑