Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1028263	1028305	43	83 [0]	[0] 42	malX	fused maltose and glucose‑specific PTS enzyme IIBC components

CGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGT  >  minE/1028306‑1028367 |                                                              cGCTTCAATCTGAAAACCCCGTGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:2199175/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGaaaaa       >  1:1612068/1‑57 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:3398225/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:2564154/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:2657435/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:2957333/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:3072889/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:3082384/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:3172162/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:3199056/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:3346889/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:3364102/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:2368776/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:3546812/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:3576368/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:374285/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:449392/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:622129/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:638617/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:838732/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:869193/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:901460/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:169751/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:1062036/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:1125651/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:1200685/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:1253099/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:1408474/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:1461101/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:1469747/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:1643853/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:2453955/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:1818255/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:1881420/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:1939409/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:1988514/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:2104113/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:219357/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:2229806/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:2289463/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGt  >  1:1018524/1‑62 (MQ=255) cGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAACCCGt  >  1:1393623/1‑62 (MQ=255) |                                                              CGCTTCAATCTGAAAACCCCGGGGCGCGATAGCGAAGTTGCCAGCTCAATCGAAAAAGCCGT  >  minE/1028306‑1028367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑