Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1153041	1153069	29	34 [0]	[0] 41	spy	envelope stress induced periplasmic protein

CTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGT  >  minE/1153070‑1153131 |                                                              cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGAttt                >  1:1274230/1‑48 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATctgctg   >  1:1851408/1‑61 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATctgctg   >  1:2669139/1‑61 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATctgctg   >  1:2959366/1‑61 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATctgctg   >  1:2180981/1‑61 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATctgctg   >  1:3289554/1‑61 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATctgctg   >  1:1934464/1‑61 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATctgctg   >  1:338877/1‑61 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATctgctg   >  1:3412842/1‑61 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATctgctg   >  1:7418/1‑61 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATctgctg   >  1:1081695/1‑61 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATctg      >  1:2129081/1‑58 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:390706/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:5291/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:547794/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:996121/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:3330140/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:728605/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:3261654/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:836233/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:3225688/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:3192437/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:3155242/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:1038980/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:1840226/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:1219783/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:1287013/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:1369541/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:1514835/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:1586206/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:1592954/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:1634412/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:1723739/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:2875291/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:1877509/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:1956621/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:196805/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:2198848/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:2207352/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:2452295/1‑62 (MQ=255) cttcCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGt  >  1:2483259/1‑62 (MQ=255) |                                                              CTTCCAGCGGCGGACGTTTCATCTGGTCACGCTGGCCTTTCATGATTTCGCGGATCTGCTGT  >  minE/1153070‑1153131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑