Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1171734	1171738	5	50 [0]	[0] 60	ynjI	predicted inner membrane protein

TTTCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAA  >  minE/1171739‑1171800 |                                                              tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:412852/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2466184/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2500442/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:283718/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2903052/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2913494/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:292797/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:3045480/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:3104315/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:3270849/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:3373874/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:337704/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:3477298/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:3485820/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:3601396/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:246350/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:428368/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:45376/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:469539/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:496853/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:529654/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:533736/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:612091/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:682248/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:687868/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:707480/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:709164/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:781448/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:85644/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:925453/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1789426/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1073780/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1149368/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1159575/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1178164/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1226090/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1379163/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1464236/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1470301/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1487014/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1543972/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1613469/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1621447/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1667910/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:171674/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1053367/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1843549/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1945911/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1952294/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:1986540/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2060542/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2086002/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2089756/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2095298/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2097789/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2123417/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2201053/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2303557/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2350221/62‑1 (MQ=255) tttCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGaaa  <  1:2356421/62‑1 (MQ=255) |                                                              TTTCGAGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAA  >  minE/1171739‑1171800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑