Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1208429	1208442	14	52 [0]	[0] 26	manZ	mannose‑specific enzyme IID component of PTS

CATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTTAC  >  minE/1208443‑1208496 |                                                      cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:2930864/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:891056/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:817298/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:643242/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:512192/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:3646638/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:3531583/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:349986/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:3426826/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:3321083/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:3283295/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:3110370/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:3079557/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:1075786/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:2876029/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:2570917/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:2538414/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:2494307/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:2139828/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:2113915/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:192830/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:1599034/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:1547087/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:1425482/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:1178937/54‑1 (MQ=255) cATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTtac  <  1:110198/54‑1 (MQ=255) |                                                      CATCCCGCTGGTTGTCTCTCGCATTACTGACCAGACGGGCAAAGAACACGTTAC  >  minE/1208443‑1208496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑