Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1241311	1241357	47	42 [0]	[0] 30	yebK	predicted DNA‑binding transcriptional regulator

ATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAA  >  minE/1241358‑1241418 |                                                             aTAACTTGAAGCGGGTCTAAGAAGCGCTGAAGGAATc                          >  1:2541639/1‑37 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGt                      >  1:2934779/1‑41 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGc            >  1:2723820/1‑51 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:913144/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:1081297/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:89954/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:836302/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:468877/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:3512717/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:3339615/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:3332439/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:3247857/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:3182941/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:2979040/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:2873815/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:2857818/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:281598/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:2693196/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:2634728/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:22640/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:225387/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:2204998/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:1899614/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:18302/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:142843/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:1375357/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:1305426/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTaa  >  1:126177/1‑61 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTa   >  1:2692536/1‑60 (MQ=255) aTAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTa   >  1:1493046/1‑60 (MQ=255) |                                                             ATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAA  >  minE/1241358‑1241418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑