Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1287948	1287961	14	6 [0]	[0] 56	shiA	shikimate transporter

CTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTGCGCA  >  minE/1287962‑1288023 |                                                              cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAAt                    >  1:2573035/1‑44 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCaa            >  1:292928/1‑52 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:3517420/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:1072999/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:2769640/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:2859460/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:294030/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:2982897/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:3059012/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:3146431/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:3348819/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:3446919/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:3460673/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:3514120/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:2738911/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:3612753/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:453854/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:470568/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:524741/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:528988/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:588190/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:622022/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:652963/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:695816/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:699626/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:791750/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:911494/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:988646/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:1876536/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:1232249/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:1254350/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:1294857/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:1305246/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:1319058/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:131937/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:1338276/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:1594248/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:160248/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:168868/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:1705170/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:1712711/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:2617870/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:1898070/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:190404/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:1954588/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:195698/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:2120250/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:2127868/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:2313525/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:2448976/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:2452475/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:2555285/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcgc   >  1:2593647/1‑61 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTGCGCa  >  1:344893/1‑62 (MQ=255) cTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTAGCAAACATTgcgc   >  1:3508230/1‑61 (MQ=255) cTTGAAGCACAATCTATATTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTgcg    >  1:1444601/1‑60 (MQ=255) |                                                              CTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTGCGCA  >  minE/1287962‑1288023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑