Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1410184	1410205	22	36 [0]	[0] 38	bcr	bicyclomycin/multidrug efflux system

CGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAACCACCA  >  minE/1410206‑1410267 |                                                              cGCCATCGCATTGGATGCCACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:716221/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGCCACGCAGCCCACAAACGCCGCAACGcc          >  1:320717/1‑54 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCCGCCCACAAACGCCGCAACGCCAAccacca  >  1:429066/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccaccg  >  1:2834570/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:2234660/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:2986592/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:1735352/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:3444743/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:3463757/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:370407/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:3043638/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:230576/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:3135570/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:2197195/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:455333/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:1904764/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:514349/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:567906/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAaccacc   >  1:572082/1‑61 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:3277949/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:3024944/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:3394504/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:426223/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:1097248/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:1079035/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:1233224/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:315795/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:1021349/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:273007/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:2729591/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:2711314/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:2705398/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:2294519/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:1973680/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:1884550/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:1774212/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:1770108/1‑62 (MQ=255) cGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAAccacca  >  1:1749033/1‑62 (MQ=255) |                                                              CGCCATCGCATTGGATGACACCATCGACACGCAGCCCACAAACGCCGCAACGCCAACCACCA  >  minE/1410206‑1410267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑