Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1443593	1443639	47	33 [0]	[0] 29	rcsD	phosphotransfer intermediate protein in two‑component regulatory system with RcsBC

TCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAT  >  minE/1443640‑1443684 |                                             tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:2081237/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:735893/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:681145/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:591912/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:3587391/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:3319960/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:3124292/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:3095956/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:3008468/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:2943506/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:2837926/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:2660055/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:224126/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:2238124/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:2131564/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1058301/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1952406/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1936695/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1843191/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1701653/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1500372/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1446105/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1348591/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1267263/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1241751/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1200282/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1160088/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1134227/45‑1 (MQ=255) tCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAt  <  1:1108813/45‑1 (MQ=255) |                                             TCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACAT  >  minE/1443640‑1443684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑