Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1445547	1445552	6	24 [0]	[0] 33	rcsC	hybrid sensory kinase in two‑component regulatory system with RcsB and YojN

CGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAT  >  minE/1445553‑1445603 |                                                   cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:3248657/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:2759244/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:2760871/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:2840873/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:2915201/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:2955139/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:3018952/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:3022131/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:3162581/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:265325/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:3403640/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:41490/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:463593/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:707905/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:733005/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:737291/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:747263/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:1027513/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:260238/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:2582701/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:2570695/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:2541053/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:2503263/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:2402798/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:2340173/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:2260504/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:219945/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:2162169/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:1920596/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:1828694/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:1817888/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:1742446/51‑1 (MQ=255) cGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAt  <  1:1577512/51‑1 (MQ=255) |                                                   CGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACAT  >  minE/1445553‑1445603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑