Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1549518	1549536	19	8 [0]	[0] 47	vacJ	predicted lipoprotein

AATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAT  >  minE/1549537‑1549598 |                                                              aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGt                           >  1:1080958/1‑37 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCa                  >  1:2298253/1‑46 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCa   >  1:319573/1‑61 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCa   >  1:3238075/1‑61 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:3378444/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:2748537/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:3078493/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:312148/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:317493/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:3187206/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:32412/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:2679557/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:340531/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:3474453/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:3539116/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:3541837/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:649560/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:801195/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:807526/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:824667/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:920250/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:933705/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:1885907/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:1124073/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:115094/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:1158530/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:1223603/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:1247371/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:1329174/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:1343741/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:140171/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:1414917/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:18331/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:2646313/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:1894916/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:1967772/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:2096159/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:2246304/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:2431464/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:2527351/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:2601855/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:2618657/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:2646078/1‑62 (MQ=255) aaTCGCTTGTGCGTTCGGATTTTCATGCGGTTTGa                             >  1:3376552/1‑35 (MQ=255) aaTCGCTTGTGCGTTCGGATCTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:887754/1‑62 (MQ=255) aaTCGCTTGTGAGTTCGGATTTTCCTGCGGTTTGAGTTcgc                       >  1:662429/1‑41 (MQ=255) aaTAGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAt  >  1:2933242/1‑62 (MQ=255) |                                                              AATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCAT  >  minE/1549537‑1549598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑