Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1636649	1636671	23	3 [0]	[0] 47	acrD	aminoglycoside/multidrug efflux system

CGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCT  >  minE/1636672‑1636732 |                                                             cGAAAAACGCCTTCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:264633/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGATATGAACCAAAAAGGCCACGACCt  <  1:966771/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:255002/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:2432298/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:2580723/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:260497/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:2933014/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:3004445/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:3027088/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:3032992/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:3084670/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:3215957/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:3435785/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:3577982/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:387604/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:483395/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:498233/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:50667/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:527093/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:542109/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:861498/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:879104/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:91667/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:957884/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1460778/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1020466/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1069305/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1072503/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1145586/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1150725/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1204021/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1208283/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1210408/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1357691/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1385896/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1456443/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1020125/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1513392/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:177830/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1920689/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1935599/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:1944537/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:2066720/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:2092472/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:216740/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:2196863/61‑1 (MQ=255) cGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCt  <  1:2430303/61‑1 (MQ=255) |                                                             CGAAAAACGCCATCCTGATCGTCGAGTTTGCTAACGAGATGAACCAAAAAGGCCACGACCT  >  minE/1636672‑1636732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑