| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,569,694 | 1 | . | A | 54.4% | 167.7 / 199.2 | 103 | intergenic (‑500/‑37) | mtlA/yibI | fused mannitol‑specific PTS enzyme IIABC components/predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base . (47/0); new base A (56/0); total (103/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 107 total aligned reads displayed.
GATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGATATGTTTCTAAACTATTTCGCGTT > minE/2569649‑2569753 | gATTTTTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1434216/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGCCTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:433702/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACTCTGa > 1:511522/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:3540302/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:511348/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:451919/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:2092388/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:215282/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:2152901/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:416201/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:2157479/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:2363744/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:2378277/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:3551876/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:253627/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:471014/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:255896/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:3520330/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:2641032/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:3434332/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:2826658/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:3380506/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:2861901/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:3291377/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:2977982/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:3011476/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:3022489/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:3029062/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:3228868/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1122606/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1141432/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:78511/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1184800/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:800631/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:823958/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1241276/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1302580/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1352083/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:7359/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:679549/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1361149/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1078216/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1379692/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1760715/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1689827/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:619003/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1615683/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:16025/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:673516/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:154011/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1469167/1‑61 (MQ=255)gATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCCAAAAAACAACACTGa > 1:1442414/1‑61 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAaacaa > 1:216103/1‑35 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAg > 1:780155/1‑61 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAg > 1:2661694/1‑61 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAg > 1:2901205/1‑61 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:837703/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:3291080/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1049395/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:3377512/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:799494/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:780328/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:3435781/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:3584523/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:364095/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:903860/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:50560/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:606749/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1888220/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1056011/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:11612/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1235434/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1263876/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1352283/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1558642/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1642585/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1840248/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1852459/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:3061696/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1911314/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1916316/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:2055942/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:2155172/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:2269240/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:2354943/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:2498511/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1972930/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:2613958/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:2615202/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:2789659/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:2835277/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:2891822/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATACGAGGCAGa > 1:1126978/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAAAGTGAATCCGAGGCAGa > 1:1128882/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCTGCCAACCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:1354648/1‑62 (MQ=255) gCCTGACTCCCTTCTGGCAGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGa > 1:2906818/1‑62 (MQ=255) cc‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGATATGTTTCTAAACTATTTCGCGtt > 1:1164195/1‑61 (MQ=255) cc‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGATATGTTTCTAAACTATTTCGCGtt > 1:690002/1‑61 (MQ=255) cc‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGATATGTTTCTAAACTATTTCGCGtt > 1:1062490/1‑61 (MQ=255) cc‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGATATGTTTCTAAACTATTTCGCGtt > 1:2549513/1‑61 (MQ=255) | GATTATTGTCAAAATATCAGCCTGACTCCCTTCTGGCTGCCAGCCC‑AAAAACAACACTGATAAACGTGAATCCGAGGCAGATATGTTTCTAAACTATTTCGCGTT > minE/2569649‑2569753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |