| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,004,946 | 1 | . | A | 33.3% | 147.1 / 228.4 | 135 | coding (649/1533 nt) | pntA | pyridine nucleotide transhydrogenase, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base . (0/90); new base A (45/0); total (45/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.61e-37 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.08e-04 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 139 total aligned reads displayed.
TTTGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTC > minE/1004911‑1005000 | tttGGCATAGCCATCGCGGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:474743/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGCGGAATTCcgcg > 1:586933/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGa > 1:65363/1‑54 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:2341454/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:617856/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:2050991/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:2067545/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:5317/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:2096898/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:2209995/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:2307126/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:911055/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:238759/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:2539546/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:3571654/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:2649657/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:2733196/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:2770740/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:2836232/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:2936582/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:3200987/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:304201/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:1878765/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:143607/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:673555/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:799455/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:1541606/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:1622784/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:1669782/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:1153538/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:1815157/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgcg > 1:1817866/1‑62 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgc > 1:2145761/1‑61 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTTAAAAATCCAGCTCGAGGAATTCcgc > 1:2675898/1‑61 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTT‑aaaaa > 1:3211845/1‑40 (MQ=255)tttGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTT‑aa > 1:1399078/1‑38 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:3323934/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:3007133/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:797176/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:1244677/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:778126/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:3393310/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:3122629/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:3614331/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:1489932/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:1762839/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:2040964/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:469739/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:439126/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:2280807/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:2326285/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:736968/62‑1 (MQ=255) ttCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTCTGAACTTGTTCTTTCACtt < 1:1896110/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:3459018/61‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:1994232/61‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:2395635/61‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:359784/61‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtt < 1:508657/61‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:3383423/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:883132/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2623343/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:3321241/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:3381247/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:423807/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:3471630/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:75134/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:3607369/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2282778/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:1090275/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:1112472/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:1179919/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:1184322/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:1333823/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:1465553/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:15247/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:1964310/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:1995681/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2072256/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2176925/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2185695/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2224014/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2494192/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2507713/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2543062/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:295870/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2917380/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:1029684/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2884311/62‑1 (MQ=255) tCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCAATACTTTGAACTTGTTCTTTCACTTc < 1:2585307/62‑1 (MQ=255) ccTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACtac < 1:2737855/61‑3 (MQ=255) ccTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2468703/61‑1 (MQ=255) ccTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:3225909/61‑1 (MQ=255) ccTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:1260366/61‑1 (MQ=255) ccTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:3336244/61‑1 (MQ=255) ccTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:1524606/61‑1 (MQ=255) ccTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2627399/61‑1 (MQ=255) ccTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:3467983/61‑1 (MQ=255) ctTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2971932/58‑1 (MQ=255) tt‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2176309/56‑1 (MQ=255) tt‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTc < 1:2979070/56‑1 (MQ=255) | TTTGGCATAGCCATCGCCGCTGCCAGCTTCCTCTTT‑AAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTC > minE/1004911‑1005000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |