Predicted mutation
evidence seq id position mutation annotation gene description
RA minE 2,469,157 (AGC)3→4 coding (139/1383 nt) atpD → F1 sector of membrane‑bound ATP synthase, beta subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,469,1471.C85.7% 63.1 / 4.6 21coding (129/1383 nt)atpDF1 sector of membrane‑bound ATP synthase, beta subunit
Reads supporting (aligned to +/- strand):  ref base . (0/3);  new base C (0/18);  total (0/21)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*minE2,469,1472.A85.7% 53.6 / 5.6 21coding (129/1383 nt)atpDF1 sector of membrane‑bound ATP synthase, beta subunit
Reads supporting (aligned to +/- strand):  ref base . (0/3);  new base A (0/18);  total (0/21)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01
*minE2,469,1473.G85.7% 60.8 / 5.0 21coding (129/1383 nt)atpDF1 sector of membrane‑bound ATP synthase, beta subunit
Reads supporting (aligned to +/- strand):  ref base . (0/3);  new base G (0/18);  total (0/21)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01

AAATGGTAATGAGCGTCTGGTGCTGGAAGTT‑‑‑CAGCAGCAGCTCGGCGGCGGTATCGTACGTA  >  minE/2469117‑2469178
                               |||                               
aaaTGGTAATGAGCGTCTGGTGCTGGAAGTT‑‑‑CAGCAGCAGCTCGGCGGCGGTATcgtacgta  <  1:1203192/62‑1 (MQ=255)
aaaTGGTAATGAGCGTCTGGTGCTGGAAGTT‑‑‑CAGCAGCAGCTCGGCGGCGGTATcgtacgta  <  1:1409/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:456006/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:927133/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:788163/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:684990/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:63509/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:617053/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:604239/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:5336/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:496443/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:487727/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:1003510/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:264469/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:258709/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:206739/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:19810/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:1169906/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:1077677/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTTCAGCAGCAGCAGCTCGGCGGCGGTATcgtacg    <  1:1013035/62‑1 (MQ=255)
 aaTGGTAATGAGCGTCTGGTGCTGGAAGTT‑‑‑CAGCAGCAGCTCGGCGGCGGTATcgtacgta  <  1:689128/61‑1 (MQ=255)
                               |||                               
AAATGGTAATGAGCGTCTGGTGCTGGAAGTT‑‑‑CAGCAGCAGCTCGGCGGCGGTATCGTACGTA  >  minE/2469117‑2469178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: