Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2170554	2170559	6	100 [0]	[0] 16	rpoN	RNA polymerase, sigma 54 (sigma N) factor

CAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAA  >  minE/2170493‑2170553                                                             | cattCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:255125/58‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCGCGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:27324/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGATGATGTGCTGAaagaa  <  1:733960/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAgagaa  <  1:727176/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:670185/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:76491/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:764223/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:748142/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:722830/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:708515/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:687037/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:681173/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:673866/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:765496/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:661329/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:653168/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:634846/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:607915/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:604954/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:596411/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:579099/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:565554/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:546244/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:538400/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:531726/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:88795/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:985485/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:985093/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:979656/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:97185/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:962711/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:943795/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:932078/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:92832/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:908520/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:907158/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:901384/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:894735/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:526199/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:861007/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:850083/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:838133/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:83810/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:819377/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:816729/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:815440/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:802693/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:800094/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:775278/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:769976/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1148205/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1002199/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:163961/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:158076/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:150089/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:125859/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1202313/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1189468/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1186101/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1184248/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1156968/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1150283/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:167937/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1141975/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1115532/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1112035/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1110984/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1092993/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1074044/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:106542/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1063602/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1041938/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1014706/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:1002521/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:20856/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:5215/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:507515/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:47593/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:473675/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:465969/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:457129/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:448892/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:445740/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:445582/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:435397/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:433967/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:431062/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:383590/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:369049/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:342161/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:341114/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:270920/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:260921/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:253922/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:245115/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:222721/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:189565/61‑1 (MQ=255) cAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGAAGTGCTGAaagaa  <  1:881887/61‑1 (MQ=255)  aaTCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:392910/60‑1 (MQ=255)  aaTCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAaagaa  <  1:784491/60‑1 (MQ=255)                                                             | CAATCACGACTTCCGCACTTTAATGCGCGTCACGCGTCTGAAAGAAGATGTGCTGAAAGAA  >  minE/2170493‑2170553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑