Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2204976	2205288	313	86 [0]	[0] 57	aaeR	predicted DNA‑binding transcriptional regulator, efflux system

GAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTG  >  minE/2204922‑2204975                                                      | gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCTCACGCAGCATTGGCCTg  >  1:822036/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:505246/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:60171/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:549187/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:534915/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:525457/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:524873/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:524327/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:518027/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:511442/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:508654/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:507345/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:655989/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:500751/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:492654/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:492210/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:478484/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:45636/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:454008/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:450193/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:444350/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:100463/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:803153/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:977940/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:968546/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:945557/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:931308/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:913659/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:875595/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:851888/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:847943/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:843385/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:80691/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:602169/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:797971/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:774309/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:747243/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:742732/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:711832/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:699056/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:672279/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:661373/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:438478/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1098120/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:172119/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:142899/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:13920/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:131298/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1143742/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1142106/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1141937/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1139453/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1139218/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1105558/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:189489/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1095426/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1067649/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1060958/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1056192/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1051815/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1034027/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:102461/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1017395/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:1006706/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:293897/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:420241/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:409960/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:395492/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:392099/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:388851/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:385432/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:372358/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:362667/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:346586/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:299365/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:433768/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:292341/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:26971/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:268241/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:267479/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:258282/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:225311/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:212521/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:212001/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTg  >  1:189642/1‑54 (MQ=255) gAAGATGAGTTGCAGGTAAAGCTGTTAAAACGTAGCACACGCAGCATTGGCCTg  >  1:708561/1‑54 (MQ=255)                                                      | GAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTG  >  minE/2204922‑2204975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑