Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2343341	2343343	3	80 [0]	[0] 35	glnG	fused DNA‑binding response regulator in two‑component regulatory system with GlnL, nitrogen regulator I (NRI)

CAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCAA  >  minE/2343280‑2343340                                                             | cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAATTAAAGGTGACGTTTATGCaa  <  1:723254/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGTaa  <  1:592556/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:604437/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:714712/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:684664/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:671484/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:668467/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:658412/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:657026/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:650151/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:627048/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:620001/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:721859/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:603982/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:571817/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:567795/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:56648/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:565339/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:556118/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:508466/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:1001016/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:850351/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:99480/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:977295/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:957975/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:903767/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:902284/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:894904/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:882174/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:864496/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:858631/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:503335/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:834263/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:833269/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:810728/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:782845/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:77812/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:770600/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:736151/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:732636/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:1198140/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:495853/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:209244/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:201789/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:183705/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:17179/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:169709/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:157711/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:146009/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:124696/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:216952/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:1188196/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:1140640/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:1138092/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:1111511/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:1110502/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:1049814/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:1047971/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:1003170/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:368000/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:489465/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:465414/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:461379/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:459276/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:440289/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:424959/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:400028/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:399732/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:390878/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:218578/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:338780/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:296934/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:27793/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:252998/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:25283/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:223792/61‑1 (MQ=255) cAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:222462/61‑1 (MQ=255)  aGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:354679/60‑1 (MQ=255)      cATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCaa  <  1:746897/56‑1 (MQ=255)                          ccTGCCTATCAGGAAATATAGGTGACGTTTATGCaa  <  1:1026450/36‑1 (MQ=255)                                                             | CAGGGCATACCGAGTTCTCGGTTTACCTGCCTATCAGGAAATAAAGGTGACGTTTATGCAA  >  minE/2343280‑2343340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑