Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2540272	2540273	2	45 [0]	[0] 7	rfaJ	UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase

AGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATTATA  >  minE/2540210‑2540271                                                              | aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:76132/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:378771/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:439507/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:466450/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:52174/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:529406/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:550567/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:581539/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:68302/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:736393/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:746423/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:1038883/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:765023/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:765073/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:778697/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:786142/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:811825/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:839687/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:928719/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:946413/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:949532/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:1191362/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:1008280/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:1067931/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:1121485/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:1131263/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:1131506/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:1140290/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:114839/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:1156012/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:1166723/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:1190047/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:348306/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:158387/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:174286/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:178069/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:19552/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:196341/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:234490/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:30450/62‑1 (MQ=255) aGACAAAACACATCAAAACTATAAAAAGCTCATTACAGAAAGTACTCTTCTTATTCATtata  <  1:835568/62‑1 (MQ=255)  gACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:662695/61‑1 (MQ=255)  gACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:176671/61‑1 (MQ=255)  gACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:261089/61‑1 (MQ=255)  gACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATtata  <  1:377140/61‑1 (MQ=255)                                                              | AGACAAAACACATCAAAACTATAAAAAGCTGATTACAGAAAGTACTCTTCTTATTCATTATA  >  minE/2540210‑2540271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑