Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2908421	2908434	14	71 [0]	[0] 40	treR	DNA‑binding transcriptional repressor

TGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACG  >  minE/2908373‑2908420                                                | tGGCAGCATGGTTTGAACTGCGAGATTTTCTGACAACGAATCCAGACg  <  1:67759/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:506658/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:662312/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:631543/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:625274/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:560994/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:535280/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:523737/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:518788/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:666901/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:504130/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:487120/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:480272/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:454331/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:440516/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:437296/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:43577/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:418065/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:905001/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:998730/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:998431/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:97397/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:960309/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:932851/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:913093/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:91085/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:907156/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:663583/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:86935/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:847079/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:77215/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:74286/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:722515/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:689302/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:411725/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:1177069/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:1066828/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:225176/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:172856/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:164281/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:153084/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:131853/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:123631/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:1179119/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:227202/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:1174577/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:1169397/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:1168452/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:115067/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:1127172/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:1097035/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:1083969/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:1081591/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:326415/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:406766/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:404479/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:402067/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:380199/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:377762/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:361115/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:341827/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:340228/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:246228/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:324886/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:320440/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:306659/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:305901/48‑1 (MQ=255) tGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:30368/48‑1 (MQ=255)  ggCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:146566/47‑1 (MQ=255)  ggCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:2850/47‑1 (MQ=255)           gTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACg  <  1:540920/38‑1 (MQ=255)                                                | TGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACG  >  minE/2908373‑2908420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑