Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1770704	1770752	49	65 [0]	[0] 3	pheA	fused chorismate mutase P and prephenate dehydratase

ATTACATTACTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTG  >  minE/1770642‑1770703                                                              | attacattacTCGCCTGTTCCAGCTCATCATTTAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:598059/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:631647/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:743563/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:73858/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:701951/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:687134/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:685033/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:680691/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:644719/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:641063/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:77745/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:6180/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:589042/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:564858/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:556537/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:552350/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:502864/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:48006/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:784504/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:789997/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:840824/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:844970/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:850761/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:851578/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:864982/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:889656/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:934239/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:937584/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:938777/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:976948/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:985862/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:985988/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:992212/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:144975/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:1026237/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:103214/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:1066974/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:1069637/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:1089136/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:1097292/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:1103961/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:1130087/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:1137848/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:115054/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:1165876/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:1179945/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:119985/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:136010/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:1005351/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:145371/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:170877/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:202107/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:205490/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:255310/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:261530/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:263911/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:291343/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:304413/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:327369/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:331760/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:370958/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:380983/62‑1 (MQ=255) attacattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:401351/62‑1 (MQ=255)     cattacTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:1065968/58‑1 (MQ=255)          cTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTg  <  1:269340/53‑1 (MQ=255)                                                              | ATTACATTACTCGCCTGTTCCAGCTCATCATTGAAGATTCCGTATTAACTCAGCAGGCTTTG  >  minE/1770642‑1770703

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑