Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1775361	1775401	41	76 [0]	[0] 11	yfiN	predicted diguanylate cyclase

TGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGC  >  minE/1775299‑1775360                                                              | tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:480280/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:738240/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:724531/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:65784/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:620521/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:567838/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:558962/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:554154/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:512405/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:500763/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:747066/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:424088/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:421043/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:399497/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:398671/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:397865/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:380155/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1016304/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:34151/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:906103/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:982768/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:973202/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:969579/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:968149/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:961716/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:955050/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:951831/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:91707/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:342604/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:906054/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:903876/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:886757/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:844765/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:844061/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:828013/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:811722/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:765833/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1089472/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1172849/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1158621/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1158261/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1145751/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1129800/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1122463/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1118749/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1096586/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:332612/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1083043/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:106848/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:106580/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1058112/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1055051/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1046872/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1039252/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1017726/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:245537/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:338275/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:278670/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:277488/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:271359/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:265962/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:264771/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:264516/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1194737/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:233543/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:204281/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:202484/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:192952/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:186246/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:177987/62‑1 (MQ=255) tGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:167814/62‑1 (MQ=255)   aaaCACTGGCAGCGCGGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:481712/60‑1 (MQ=255)     acacTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:1092319/58‑1 (MQ=255)           gCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:864796/52‑1 (MQ=255)                 cTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:740365/46‑1 (MQ=255)                      ccAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAagc  <  1:256099/41‑1 (MQ=255)                                                              | TGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGC  >  minE/1775299‑1775360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑