Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2240001	2240038	38	131 [0]	[0] 42	zraS	sensory histidine kinase in two‑component regulatory system with ZraR

CGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCA  >  minE/2240039‑2240100 |                                                              cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGTGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:1000926/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGttt                        >  1:190786/1‑40 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGc   >  1:950462/1‑61 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGc   >  1:574484/1‑61 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:774371/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:962341/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:633399/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:687557/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:690075/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:709559/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:740989/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:749744/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:750230/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:915838/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:803274/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:977346/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:808506/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:854106/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:855816/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:892727/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:912926/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:233801/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:1039416/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:1053145/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:1061845/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:1110706/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:1145429/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:1168747/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:1184142/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:1199153/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:187735/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:574438/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:238946/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:268227/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:301915/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:315922/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:397458/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:478649/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:511076/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:54364/1‑62 (MQ=255) cGTAGTTTCCGTTTTCCCAAGCAGCCGCCACCGGGACTTTTCCTCTg                 >  1:695239/1‑47 (MQ=255) cGTAGTTTCCGTTTTCCCAAGAAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCa  >  1:870750/1‑62 (MQ=255) |                                                              CGTAGTTTCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCA  >  minE/2240039‑2240100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑