Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2544161	2544162	2	9 [0]	[0] 46	rfaL	O‑antigen ligase

AAGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTA  >  minE/2544163‑2544204 |                                          aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:758686/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:1007773/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:42340/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:463774/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:488396/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:533054/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:563830/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:635686/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:64466/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:718383/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:721851/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:752475/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:419958/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:841541/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:846540/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:878477/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:891187/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:911781/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:916472/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:920677/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:940336/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:973502/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:979751/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:129638/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:1019045/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:1036807/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:1052074/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:1079463/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:1083851/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:109272/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:1115190/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:1141316/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:1158647/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:1166369/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:392651/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:159107/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:26893/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:301281/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:342740/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:353252/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:35537/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:3699/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:372061/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:375667/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTa  <  1:378147/42‑1 (MQ=255) aaGAAAACAATAAAAGAACCAAATATAAAAATTTTGGCAGTa  <  1:903381/42‑1 (MQ=255) |                                          AAGAAAACAATAAAAGAACCAAATATAAATATTTTGGCAGTA  >  minE/2544163‑2544204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑