Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2553612	2553678	67	15 [0]	[0] 48	envC	protease with a role in cell division

CAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGAT  >  minE/2553679‑2553715 |                                     cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCg    >  1:1160326/1‑35 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:760298/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:57543/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:57573/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:58800/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:589424/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:600351/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:640504/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:643191/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:662465/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:689188/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:73391/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:759439/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:544835/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:805013/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:831117/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:832211/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:833229/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:86923/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:876767/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:916366/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:938728/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:948657/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:955251/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:171267/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:1005827/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:1007964/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:1042072/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:1080732/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:1120414/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:1134956/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:1150141/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:1181822/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:1183415/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:1189777/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:152355/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:1004901/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:181149/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:211242/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:251035/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:302230/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:348027/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:493368/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:495967/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:496057/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:507366/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGa   >  1:526396/1‑36 (MQ=255) cAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGAt  >  1:634163/1‑37 (MQ=255) |                                     CAGCGTAATTCACCCTGTAGCTGTTCGCCATAGCGAT  >  minE/2553679‑2553715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑