Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2661681	2661882	202	36 [0]	[0] 65	rtcR	sigma 54‑dependent transcriptional regulator of rtcBA expression

TGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGC  >  minE/2661883‑2661931 |                                                 tGCCAAACGGGTCAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:463947/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCATCAGCATTGc  <  1:928456/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:52119/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:623280/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:620700/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:615568/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:611122/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:580759/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:556849/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:544232/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:529759/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:638400/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:510897/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:495054/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:45865/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:441004/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:438185/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:329816/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:639558/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:733497/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:749887/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:754046/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:754495/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:76035/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:830911/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:8692/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:891459/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:928092/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:937773/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:940271/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:972300/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:972954/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:200539/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:103701/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:1042369/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:1083075/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:1086885/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:1102896/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:1106603/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:114611/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:1156217/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:1195512/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:120984/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:121587/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:124125/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:149151/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:175334/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:183607/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:262790/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:329181/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:328869/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:326915/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:299504/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:272964/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:268044/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:267549/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:1025/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:250364/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:248495/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:237784/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:232852/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:218518/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:213868/49‑1 (MQ=255) tGCCAAACGGGTAAAAGGCTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:1065791/49‑1 (MQ=255) tGCCAAACGCGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGc  <  1:614888/49‑1 (MQ=255) |                                                 TGCCAAACGGGTAAAAGGTTTTCTCTTCAATGGCTTTCAGCAGCATTGC  >  minE/2661883‑2661931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑