Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	247131	247222	92	43 [0]	[0] 24	phoR	sensory histidine kinase in two‑component regulatory system with PhoB

GCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGCC  >  minE/247223‑247282 |                                                            gcgAGGCTCAGACTCTGAGTTAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:498952/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:5419/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:964719/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:952571/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:94002/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:889337/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:885625/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:665887/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:630603/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:621542/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:589614/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:545270/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:1006063/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:447816/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:282940/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:268039/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:252256/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:225171/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:171015/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:1198394/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:1107439/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGcc  >  1:1102269/1‑60 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGc   >  1:668603/1‑59 (MQ=255) gcgAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGc   >  1:1125394/1‑59 (MQ=255) |                                                            GCGAGGCTCAGACTCTGAGTCAGAAAAAACAGACATTTACCTTTGAGATAGATAACGGCC  >  minE/247223‑247282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑