Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1125801	1125815	15	13 [0]	[0] 55	pheS	phenylalanine tRNA synthetase, alpha subunit

CCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGG  >  minE/1125816‑1125877 |                                                              ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCTATGACGTCCACTTCTGCAGAAgg  <  1:72991/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:643529/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:373637/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:390711/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:396719/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:401412/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:405799/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:457642/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:501166/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:526685/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:552658/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:557595/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:577609/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:598243/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:609766/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:342329/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:669311/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:717754/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:754923/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:763510/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:782023/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:783332/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:809242/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:863505/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:895926/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:931678/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:97061/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:178867/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:1036684/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:1037276/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:1051599/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:1101047/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:1131086/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:1144957/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:1173576/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:1180895/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:1194476/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:1196415/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:139675/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:141942/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:100188/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:191334/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:193706/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:219319/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:239920/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:243063/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:24349/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:243720/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:266860/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:275542/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:298659/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:307571/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:319295/62‑1 (MQ=255) ccGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:33750/62‑1 (MQ=255) ccGCAGCCCAGCACTACCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg  <  1:72156/62‑1 (MQ=255) |                                                              CCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGG  >  minE/1125816‑1125877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑