Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1828782	1829036	255	20 [0]	[0] 44	mutS	methyl‑directed mismatch repair protein

CAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC  >  minE/1829037‑1829097 |                                                             caGCGTGCAGGATGGCGCGGCGCGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:36935/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:775249/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:528782/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:530246/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:588453/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:60119/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:615779/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:645017/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:656923/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:67364/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:754705/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:765952/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:465603/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:792945/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:801472/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:82418/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:836383/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:853856/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:889130/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:892016/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:892999/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:951266/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:963648/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:245319/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:1064105/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:1084865/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:1088333/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:1100589/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:115580/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:1160079/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:120193/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:124142/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:182181/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:195058/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:1059971/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:289288/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:291975/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:296962/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:311944/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:315976/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:329981/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:374854/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGc  <  1:404690/61‑1 (MQ=255) caGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGGTGCAGCTCTGGCAGGc  <  1:457887/61‑1 (MQ=255) |                                                             CAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC  >  minE/1829037‑1829097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑