Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1840862	1841034	173	8 [0]	[0] 56	[truD]–[ispF]	[truD],[ispF]

CAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCG  >  minE/1841035‑1841095 |                                                             cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAAcat                            >  1:620003/1‑35 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCTTCCATATGGCAGCCGAGATCTTCg  >  1:616629/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATgg                 >  1:591385/1‑46 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCa               >  1:339369/1‑48 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGCTCTTCg  >  1:547634/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTc   >  1:943968/1‑60 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:734704/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:553242/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:570501/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:575821/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:584483/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:610190/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:616925/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:687512/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:716054/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:998861/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:767761/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:799383/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:801129/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:824972/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:8324/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:839465/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:84/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:844690/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:896301/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:899115/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:923775/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:952709/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:501144/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:1011211/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:1093452/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:1095453/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:1116906/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:1158616/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:1196800/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:120202/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:172766/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:175632/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:210734/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:226866/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:25828/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:270740/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:289406/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:328978/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:344962/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:355414/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:378737/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:399315/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:401031/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:442847/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:451981/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:4540/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:4902/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:505917/1‑61 (MQ=255) cAGTTTTTCCGTAGTAGTGGCTTTAACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:1000929/1‑61 (MQ=255) cAGTTTTTACGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCg  >  1:892849/1‑61 (MQ=255) |                                                             CAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATCATCCATATGGCAGCCGAGATCTTCG  >  minE/1841035‑1841095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑