| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,043,419 | 1 | . | A | 47.7% | 7.0 / 183.9 | 88 | coding (499/630 nt) | yqiJ | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base . (0/46); new base A (0/42); total (0/88) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 106 total aligned reads displayed.
ACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAG > minE/2043359‑2043470 | aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGcc > 1:466268/1‑61 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGcc > 1:1124251/1‑61 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:931779/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:612590/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:676242/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:507627/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:685411/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:701625/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:723048/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:264271/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:216742/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:769116/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:167079/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:139906/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:1069476/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:823640/1‑62 (MQ=255)aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑a > 1:869925/1‑62 (MQ=255) atcaAGCCACTTCAGGTATTCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:693070/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:433709/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:362957/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:365181/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:370824/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:388789/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:870025/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:431639/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:431658/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:683461/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:433021/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:687581/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:454365/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:884858/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:472362/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:895078/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:666181/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:635297/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:56322/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:585473/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:21792/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:1188106/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:786108/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:183713/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:185524/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:212972/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:767742/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:851686/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:361555/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:235379/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:730850/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:245932/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:114510/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:858283/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:308467/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:318153/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:344231/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:797598/62‑1 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAACGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:785742/62‑1 (MQ=255) tcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:960333/61‑1 (MQ=255) tcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:359689/61‑1 (MQ=255) caAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:136465/60‑1 (MQ=255) tCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACat < 1:67414/43‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:88328/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:796340/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:799217/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:1157837/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:1156590/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:1135153/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:1123571/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:110695/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:878405/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:879047/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:58929/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:1084688/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:888878/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:1078451/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:89933/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:915161/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:92499/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:1011297/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:1004535/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:713915/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:579429/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:577/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:632214/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:551562/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:524959/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:432582/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:420398/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:308347/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:167225/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:304886/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:733591/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:753258/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:213826/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:191267/62‑1 (MQ=255) cAATTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:187148/62‑1 (MQ=255) aaTTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:242314/61‑1 (MQ=255) aaTTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:309681/61‑1 (MQ=255) aaTTTGGCCAAAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAg < 1:518159/61‑1 (MQ=255) tttGGCC‑AAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTc < 1:797502/51‑1 (MQ=255) tttGGCC‑AAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTc < 1:785913/51‑1 (MQ=255) | ACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCC‑AAATACATTATTTACTACTGGAGCCTGAAGAAGGAAAAATTTTCACTAAAG > minE/2043359‑2043470 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |