| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | minE | 1,896,246 | C→A | intergenic (‑199/‑33) | amiC ← / → argA | N‑acetylmuramoyl‑L‑alanine amidase/fused acetylglutamate kinase homolog (inactive) and amino acid N‑acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,896,246 | 0 | C | A | 98.0% | 156.5 / ‑3.2 | 49 | intergenic (‑199/‑33) | amiC/argA | N‑acetylmuramoyl‑L‑alanine amidase/fused acetylglutamate kinase homolog (inactive) and amino acid N‑acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (0/48); total (0/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 | |||||||||||
TCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGT > minE/1896194‑1896303 | tctcGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACACTAATTTCGa < 1:142883/62‑1 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGATGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:1078477/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:586692/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:1006332/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:381982/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:399613/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:406475/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:465735/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:473747/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:52429/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:549749/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:562745/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:575523/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:577094/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:579935/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:331528/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:626395/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:650475/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:658580/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:7048/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:790029/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:815211/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:857315/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:869606/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:913108/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:960047/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:963473/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:1183494/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:1007526/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:1007687/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:1015492/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:1032565/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:1045555/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:1083999/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:1088785/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:109714/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:1098336/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:111554/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:114568/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:1147315/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:326059/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:124093/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:175189/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:177370/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:265900/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:271523/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:282670/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGGGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:300387/62‑2 (MQ=255) tACAATAATTTCGAATAATCATGCAAAGAGGAGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:511596/62‑2 (MQ=255) acaaTAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:1184795/61‑2 (MQ=255) acaaTAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:24110/61‑2 (MQ=255) acaaTAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:754588/61‑2 (MQ=255) acaaTAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:266665/61‑2 (MQ=255) acaaTAATTTCGAATAATCATGCAAAGAGGTGTACCGTGGTAAAGGAACGTAAAACCGAgc < 1:452470/61‑2 (MQ=255) | TCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGT > minE/1896194‑1896303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |